Wiro J. Niessen

Diego D. B. Carvalho, Stefan Klein, Zeynettin Akkus, Gerrit L. ten Kate, Arend F. L. Schinkel, Johan G. Bosch, Aad van der Lugt, Wiro J. Niessen: Estimating 3D lumen centerlines of carotid arteries in free-hand acquisition ultrasound. Int. J. Computer Assisted Radiology and Surgery 7(2): 207-215 (2012)

Hortense A. Kirisli, Vikas Gupta, Sharon W. Kirschbaum, A. Rossi, Coert Metz, Michiel Schaap, Robert Jan van Geuns, Nico Mollet, Boudewijn P. F. Lelieveldt, Johan H. C. Reiber, Theo van Walsum, Wiro J. Niessen: Comprehensive visualization of multimodal cardiac imaging data for assessment of coronary artery disease: first clinical results of the SMARTVis tool. Int. J. Computer Assisted Radiology and Surgery 7(4): 557-571 (2012)

A. A. Isola, Coert Metz, Michiel Schaap, Stefan Klein, Michael Grass, Wiro J. Niessen: Cardiac motion-corrected iterative cone-beam CT reconstruction using a semi-automatic minimum cost path-based coronary centerline extraction. Comp. Med. Imag. and Graph. 36(3): 215-226 (2012)

Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Piotr Wielopolski, Adriaan Moelker, Tirza Springeling, Monique Bernsen, Wiro J. Niessen, Erik Meijering: Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. Medical Image Analysis 16(1): 301-324 (2012)

Vikas Gupta, Hortense A. Kirisli, Emile A. Hendriks, Rob J. van der Geest, Martijn van de Giessen, Wiro J. Niessen, Johan H. C. Reiber, Boudewijn P. F. Lelieveldt: Cardiac MR perfusion image processing techniques: A survey. Medical Image Analysis 16(4): 767-785 (2012)

Hui Tang, Theo van Walsum, Robbert S. van Onkelen, Reinhard Hameeteman, Stefan Klein, Michiel Schaap, Fufa L. Tori, Quirijn J. A. van den Bouwhuijsen, Jacqueline C. M. Witteman, Aad van der Lugt, Lucas J. van Vliet, Wiro J. Niessen: Semiautomatic carotid lumen segmentation for quantification of lumen geometry in multispectral MRI. Medical Image Analysis 16(6): 1202-1215 (2012)

Fedde van der Lijn, Benjamin F. J. Verhaaren, M. Arfan Ikram, Stefan Klein, Marleen de Bruijne, Henri A. Vrooman, Meike W. Vernooij, Alexander Hammers, Daniel Rueckert, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen: Automated measurement of local white matter lesion volume. NeuroImage 59(4): 3901-3908 (2012)

Tom den Heijer, Fedde van der Lijn, Meike W. Vernooij, Marius de Groot, P. J. Koudstaal, Aad van der Lugt, Gabriel P. Krestin, A. Hofman, Wiro J. Niessen, Monique M. B. Breteler: Structural and diffusion MRI measures of the hippocampus and memory performance. NeuroImage 63(4): 1782-1789 (2012)

Fedde van der Lijn, Marleen de Bruijne, Stefan Klein, Tom den Heijer, Yoo Young Hoogendam, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen: Automated Brain Structure Segmentation Based on Atlas Registration and Appearance Models. IEEE Trans. Med. Imaging 31(2): 276-286 (2012)

Coert Metz, Nora Baka, Hortense A. Kirisli, Michiel Schaap, Stefan Klein, Lisan Neefjes, Nico Mollet, Boudewijn P. F. Lelieveldt, Marleen de Bruijne, Wiro J. Niessen, Theo van Walsum: Regression-Based Cardiac Motion Prediction From Single-Phase CTA. IEEE Trans. Med. Imaging 31(6): 1311-1325 (2012)

Nora Baka, Marleen de Bruijne, Theo van Walsum, B. L. Kaptein, J. E. Giphart, Michiel Schaap, Wiro J. Niessen, Boudewijn P. F. Lelieveldt: Statistical Shape Model-Based Femur Kinematics From Biplane Fluoroscopy. IEEE Trans. Med. Imaging 31(8): 1573-1583 (2012)

Jyotirmoy Banerjee, Adriaan Moelker, Wiro J. Niessen, Theo van Walsum: 3D LBP-Based Rotationally Invariant Region Description. ACCV Workshops (1) 2012: 26-37

Babak Ghafaryasl, Fedde van der Lijn, Marielle Poels, Henri A. Vrooman, M. Arfan Ikram, Wiro J. Niessen, Aad van der Lugt, Meike W. Vernooij, Marleen de Bruijne: A computer aided detection system for cerebral microbleeds in brain MRI. ISBI 2012: 138-141

Arna van Engelen, Wiro J. Niessen, Stefan Klein, Harald C. Groen, Hence J. M. Verhagen, Jolanda Wentzel, Aad van der Lugt, Marleen de Bruijne: Supervised in-vivo plaque characterization incorporating class label uncertainty. ISBI 2012: 246-249

Rahil Khurram Shahzad, Michiel Schaap, Frederico Bastos Goncalves, Coert Metz, Hui Tang, Theo van Walsum, Adriaan Moelker, Lucas J. van Vliet, Wiro J. Niessen: Automatic detection of calcified lesions in the descending aorta using contrast enhanced CT scans. ISBI 2012: 250-253

Hui Tang, Theo van Walsum, Reinhard Hameeteman, Michiel Schaap, Aad van der Lugt, Lucas J. van Vliet, Wiro J. Niessen: Lumen segmentation of atherosclerotic carotid arteries in CTA. ISBI 2012: 274-277

Wiro J. Niessen, Henri A. Vrooman, Renske de Boer, Fedde van der Lijn, Hakim C. Achterberg, Marcel Koek, Stefan Klein, Aad van der Lugt, Marleen de Bruijne, M. Arfan Ikram, Meike W. Vernooij: Quantitative imaging biomarkers in neurologic disease: Population study perspective. ISBI 2012: 911

Karin Bol, Joost C. Haeck, Lejla Alic, Wiro J. Niessen, Marion de Jong, Monique Bernsen, Jifke F. Veenland: Quantification of DCE-MRI: A validation of three techniques with 3D-histology. ISBI 2012: 1044-1047

Valerio Fortunati, René F. Verhaart, Fedde van der Lijn, Wiro J. Niessen, Jifke F. Veenland, Maarten M. Paulides, Theo van Walsum: Hyperthermia critical tissues automatic segmentation of head and neck CT images using atlas registration and graph cuts. ISBI 2012: 1683-1686

Artem Khmelinskii, E. Plenge, Peter Kok, Oleh Dzyubachyk, Dirk H. J. Poot, E. Suidgeest, Charl P. Botha, Wiro J. Niessen, L. van der Weerd, Erik Meijering, Boudewijn P. F. Lelieveldt: Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. ISBI 2012: 1723-1726

Andres Arias, Jens Petersen, Arna van Engelen, Hui Tang, Mariana Selwaness, Jacqueline C. M. Witteman, Aad van der Lugt, Wiro J. Niessen, Marleen de Bruijne: Carotid Artery Wall Segmentation by Coupled Surface Graph Cuts. MCV 2012: 38-47

Ha Manh Luu, Adriaan Moelker, Camiel Klink, Adrienne Mendrik, Wiro J. Niessen, Theo van Walsum: Evaluation of Diffusion Filters for 3D CTA Liver Vessel Enhancement. Abdominal Imaging 2012: 168-177

Vikas Gupta, Martijn van de Giessen, Hortense A. Kirisli, Sharon W. Kirschbaum, Wiro J. Niessen, Boudewijn P. F. Lelieveldt: Robust Motion Correction in the Frequency Domain of Cardiac MR Stress Perfusion Sequences. MICCAI (1) 2012: 667-674

Wei Sun, Wiro J. Niessen, Stefan Klein: Hierarchical vs. Simultaneous Multiresolution Strategies for Nonrigid Image Registration. WBIR 2012: 60-69

Diego D. B. Carvalho, Stefan Klein, Zeynettin Akkus, Gerrit L. ten Kate, Hui Tang, Mariana Selwaness, Arend F. L. Schinkel, Johan G. Bosch, Aad van der Lugt, Wiro J. Niessen: Registration of Free-Hand Ultrasound and MRI of Carotid Arteries through Combination of Point-Based and Intensity-Based Algorithms. WBIR 2012: 131-140

Coert Metz, Stefan Klein, Michiel Schaap, Theo van Walsum, Wiro J. Niessen: Nonrigid registration of dynamic medical imaging data using nD + t B-splines and a groupwise optimization approach. Medical Image Analysis 15(2): 238-249 (2011)

K. Hameeteman, Maria A. Zuluaga, Moti Freiman, Leo Joskowicz, Olivier Cuisenaire, Leonardo Florez-Valencia, Mehmet Akif Gülsün, Karl Krissian, Julien Mille, Wilbur C. K. Wong, Maciej Orkisz, Hüseyin Tek, Marcela Hernández Hoyos, Fethallah Benmansour, Albert C. S. Chung, Sietske Rozie, M. van Gils, L. van den Borne, Jacob Sosna, P. Berman, N. Cohen, Philippe Douek, I. Sánchez, M. Aissat, Michiel Schaap, Coert Metz, Gabriel P. Krestin, Aad van der Lugt, Wiro J. Niessen, Theo van Walsum: Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading. Medical Image Analysis 15(4): 477-488 (2011)

Nora Baka, B. L. Kaptein, Marleen de Bruijne, Theo van Walsum, J. E. Giphart, Wiro J. Niessen, Boudewijn P. F. Lelieveldt: 2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models. Medical Image Analysis 15(6): 840-850 (2011)

Renske de Boer, Michiel Schaap, Fedde van der Lijn, Henri A. Vrooman, Marius de Groot, Aad van der Lugt, M. Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Wiro J. Niessen: Statistical analysis of minimum cost path based structural brain connectivity. NeuroImage 55(2): 557-565 (2011)

Michiel Schaap, Theo van Walsum, Lisan Neefjes, Coert Metz, Ermanno Capuano, Marleen de Bruijne, Wiro J. Niessen: Robust Shape Regression for Supervised Vessel Segmentation and its Application to Coronary Segmentation in CTA. IEEE Trans. Med. Imaging 30(11): 1974-1986 (2011)

Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik H. W. Meijering: Quantitative comparison of tracking methods for motion analysis in tagged MRI. ISBI 2011: 345-348

Noemí Carranza-Herrezuelo, Ihor Smal, Oleh Dzyubachyk, Wiro J. Niessen, Erik H. W. Meijering: Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. ISBI 2011: 1921-1924

Coert Metz, Michiel Schaap, Stefan Klein, Peter Rijnbeek, Lisan Neefjes, Nico Mollet, Carl Schultz, Patrick W. Serruys, Wiro J. Niessen, Theo van Walsum: Alignment of 4D Coronary CTA with Monoplane X-ray Angiography. AE-CAI 2011: 106-116

Dirk H. J. Poot, Marleen de Bruijne, Meike W. Vernooij, M. Arfan Ikram, Wiro J. Niessen: Improved Tissue Segmentation by Including an MR Acquisition Model. MBIA 2011: 152-159

Marcel Koek, Frederico Bastos Goncalves, Don Poldermans, Wiro J. Niessen, Rashindra Manniesing: Semi-automated Subcutaneous and Visceral Adipose Tissue Quantification in Computed Tomography. Abdominal Imaging 2011: 215-222

Nora Baka, Coert Metz, Michiel Schaap, Boudewijn P. F. Lelieveldt, Wiro J. Niessen, Marleen de Bruijne: Comparison of Shape Regression Methods under Landmark Position Uncertainty. MICCAI (2) 2011: 434-441

Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik H. W. Meijering: Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. MICCAI (1) 2011: 573-580

Oleh Dzyubachyk, Jeroen Essers, Wiggert A. van Cappellen, Céline Baldeyron, Akiko Inagaki, Wiro J. Niessen, Erik H. W. Meijering: Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. Bioinformatics 26(19): 2424-2430 (2010)

A. A. Isola, A. Ziegler, Dirk Schäfer, Thomas Köhler, Wiro J. Niessen, Michael Grass: Motion compensated iterative reconstruction of a region of interest in cardiac cone-beam CT. Comp. Med. Imag. and Graph. 34(2): 149-159 (2010)

Rashindra Manniesing, Michiel Schaap, Sietske Rozie, Reinhard Hameeteman, Danijela Vukadinovic, Aad van der Lugt, Wiro J. Niessen: Robust CTA lumen segmentation of the atherosclerotic carotid artery bifurcation in a large patient population. Medical Image Analysis 14(6): 759-769 (2010)

Renske de Boer, Henri A. Vrooman, M. Arfan Ikram, Meike W. Vernooij, Monique M. B. Breteler, Aad van der Lugt, Wiro J. Niessen: Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods. NeuroImage 51(3): 1047-1056 (2010)

Ihor Smal, Ilya Grigoriev, A. Akhmanova, Wiro J. Niessen, Erik H. W. Meijering: Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. IEEE Transactions on Image Processing 19(7): 1861-1876 (2010)

Danijela Vukadinovic, Theo van Walsum, Rashindra Manniesing, Sietske Rozie, Reinhard Hameeteman, Thomas de Weert, Aad van der Lugt, Wiro J. Niessen: Segmentation of the Outer Vessel Wall of the Common Carotid Artery in CTA. IEEE Trans. Med. Imaging 29(1): 65-76 (2010)

Ihor Smal, Marco Loog, Wiro J. Niessen, Erik H. W. Meijering: Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. IEEE Trans. Med. Imaging 29(2): 282-301 (2010)

Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik H. W. Meijering: Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. IEEE Trans. Med. Imaging 29(3): 852-867 (2010)

Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik H. W. Meijering: Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy". IEEE Trans. Med. Imaging 29(6): 1331 (2010)

Rahil Khurram Shahzad, Michiel Schaap, Theo van Walsum, Stefan Klein, Annick C. Weustink, Lucas J. van Vliet, Wiro J. Niessen: A patient-specific coronary density estimate. ISBI 2010: 9-12

Reinhard Hameeteman, Sietske Rozie, Coert Metz, Stefan Klein, Theo van Walsum, Aad van der Lugt, Wiro J. Niessen: Automated carotid artery distensibility measurements from CTA using nonrigid registration. ISBI 2010: 13-16

Stefan Klein, Marco Loog, Fedde van der Lijn, Tom den Heijer, Alexander Hammers, Marleen de Bruijne, Aad van der Lugt, Robert P. W. Duin, Monique M. B. Breteler, Wiro J. Niessen: Early diagnosis of dementia based on intersubject whole-brain dissimilarities. ISBI 2010: 249-252

Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering: Particle filtering methods for motion analysis in tagged MRI. ISBI 2010: 488-491

Dong Ping Zhang, Laurent Risser, Coert Metz, Lisan Neefjes, Nico Mollet, Wiro J. Niessen, Daniel Rueckert: Coronary artery motion modeling from 3D cardiac CT sequences using template matching and graph search. ISBI 2010: 1053-1056

Nora Baka, Marleen de Bruijne, Johan H. C. Reiber, Wiro J. Niessen, Boudewijn P. F. Lelieveldt: Confidence of model based shape reconstruction from sparse data. ISBI 2010: 1077-1080

Dong Ping Zhang, Laurent Risser, François-Xavier Vialard, Philip J. Edwards, Coert Metz, Lisan Neefjes, Nico Mollet, Wiro J. Niessen, Daniel Rueckert: Coronary Motion Estimation from CTA Using Probability Atlas and Diffeomorphic Registration. MIAR 2010: 78-87

Hakim C. Achterberg, Fedde van der Lijn, Tom den Heijer, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen, Marleen de Bruijne: Prediction of Dementia by Hippocampal Shape Analysis. MLMI 2010: 42-49

Dong Ping Zhang, Laurent Risser, Ola Friman, Coert Metz, Lisan Neefjes, Nico Mollet, Wiro J. Niessen, Daniel Rueckert: Nonrigid Registration and Template Matching for Coronary Motion Modeling from 4D CTA. WBIR 2010: 210-221

Mads Nielsen, Wiro J. Niessen, Carl-Fredrik Westin: Editorial. International Journal of Computer Vision 85(3): 209-210 (2009)

Michiel Schaap, Coert Metz, Theo van Walsum, Alina G. van der Giessen, Annick C. Weustink, Nico Mollet, Christian Bauer, Hrvoje Bogunovic, Carlos Castro-Gonzalez, Xiang Deng, Engin Dikici, Thomas O'Donnell, Michel Frenay, Ola Friman, Marcela Hernández Hoyos, Pieter H. Kitslaar, Karl Krissian, Caroline Kühnel, Miguel A. Luengo-Oroz, Maciej Orkisz, Örjan Smedby, Martin Styner, Andrzej Szymczak, Hüseyin Tek, Chunliang Wang, Simon K. Warfield, Sebastian Zambal, Yong Zhang, Gabriel P. Krestin, Wiro J. Niessen: Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Medical Image Analysis 13(5): 701-714 (2009)

Empar Rollano-Hijarrubia, Rashindra Manniesing, Wiro J. Niessen: Selective Deblurring for Improved Calcification Visualization and Quantification in Carotid CT Angiography: Validation Using Micro-CT. IEEE Trans. Med. Imaging 28(3): 446-453 (2009)

Michiel Schaap, Lisan Neefjes, Coert Metz, Alina G. van der Giessen, Annick C. Weustink, Nico Mollet, Jolanda Wentzel, Theo van Walsum, Wiro J. Niessen: Coronary Lumen Segmentation Using Graph Cuts and Robust Kernel Regression. IPMI 2009: 528-539

Fedde van der Lijn, Marleen de Bruijne, Yoo Young Hoogendam, Stefan Klein, Reinhard Hameeteman, Monique M. B. Breteler, Wiro J. Niessen: Cerebellum Segmentation in MRI Using Atlas Registration and Local Multi-Scale Image Descriptors. ISBI 2009: 221-224

Nico Karssemeijer, Henkjan J. Huisman, David J. Hawkes, John H. Hipwell, Tobias Böhler, Jan M. Lesniak, Christine Tanner, Gábor Székely, Wiro J. Niessen, Horst K. Hahn: Integrating Biological Knowledge, Novel Imaging Modalities, and Modeling in Breast Cancer Diagnosis. ISBI 2009: 386-389

Danijela Vukadinovic, Theo van Walsum, Sietske Rozie, Thomas de Weert, Rashindra Manniesing, Aad van der Lugt, Wiro J. Niessen: Carotid Artery Segmentation and Plaque Quantification in CTA. ISBI 2009: 835-838

Coert Metz, Michiel Schaap, Stefan Klein, Annick C. Weustink, Nico Mollet, Carl Schultz, Robert Jan van Geuns, Patrick W. Serruys, Theo van Walsum, Wiro J. Niessen: GPU Accelerated Alignment of 3-D CTA with 2-D X-Ray Data for Improved Guidance in Coronary Interventions. ISBI 2009: 959-962

Oleh Dzyubachyk, Wiggert A. van Cappellen, Jeroen Essers, Wiro J. Niessen, Erik H. W. Meijering: Energy Minimization Methods for Cell Motion Correction and Intracellular Analysis in Live-Cell Fluorescence Microscopy. ISBI 2009: 1127-1130

Ihor Smal, Marco Loog, Wiro J. Niessen, Erik H. W. Meijering: Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. ISBI 2009: 1175-1178

Coert Metz, Michiel Schaap, Stefan Klein, Lisan Neefjes, Ermanno Capuano, Carl Schultz, Robert Jan van Geuns, Patrick W. Serruys, Theo van Walsum, Wiro J. Niessen: Patient Specific 4D Coronary Models from ECG-gated CTA Data for Intra-operative Dynamic Alignment of CTA with X-ray Images. MICCAI (1) 2009: 369-376

Marius de Groot, Meike W. Vernooij, Stefan Klein, Alexander Leemans, Renske de Boer, Aad van der Lugt, Monique M. B. Breteler, Wiro J. Niessen: Iterative Co-linearity Filtering and Parameterization of Fiber Tracts in the Entire Cingulum. MICCAI (1) 2009: 853-860

Ihor Smal, Erik H. W. Meijering, Katharina Draegestein, Niels Galjart, Ilya Grigoriev, A. Akhmanova, M. E. van Royen, Adriaan B. Houtsmuller, Wiro J. Niessen: Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. Medical Image Analysis 12(6): 764-777 (2008)

Meike W. Vernooij, Marius de Groot, Aad van der Lugt, M. Arfan Ikram, Gabriel P. Krestin, A. Hofman, Wiro J. Niessen, Monique M. B. Breteler: White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging. NeuroImage 43(3): 470-477 (2008)

Fedde van der Lijn, Tom den Heijer, Monique M. B. Breteler, Wiro J. Niessen: Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts. NeuroImage 43(4): 708-720 (2008)

Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik H. W. Meijering: Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. IEEE Trans. Med. Imaging 27(6): 789-804 (2008)

Michiel Schaap, Arnold M. R. Schilham, Karel J. Zuiderveld, Mathias Prokop, Evert-Jan Vonken, Wiro J. Niessen: Fast Noise Reduction in Computed Tomography for Improved 3-D Visualization. IEEE Trans. Med. Imaging 27(8): 1120-1129 (2008)

Oleh Dzyubachyk, Wiro J. Niessen, Erik H. W. Meijering: Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. ISBI 2008: 185-188

Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering: A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. ISBI 2008: 264-267

Theo van Walsum, Michiel Schaap, Coert Metz, Alina G. van der Giessen, Wiro J. Niessen: Averaging Centerlines: Mean Shift on Paths. MICCAI (1) 2008: 900-907

Charl P. Botha, Gordon L. Kindlmann, Wiro J. Niessen, Bernhard Preim (Eds.): Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine, VCBM 2008, Delft, The Netherlands, 2008. Eurographics Association 2008, isbn 978-3-905674-13-2

Tanja Alderliesten, Maurits K. Konings, Wiro J. Niessen: Modeling Friction, Intrinsic Curvature, and Rotation of Guide Wires for Simulation of Minimally Invasive Vascular Interventions. IEEE Trans. Biomed. Engineering 54(1): 29-38 (2007)

Tanja Alderliesten, Peter A. N. Bosman, Wiro J. Niessen: Towards a Real-Time Minimally-Invasive Vascular Intervention Simulation System. IEEE Trans. Med. Imaging 26(1): 128-132 (2007)

Rashindra Manniesing, Max A. Viergever, Wiro J. Niessen: Vessel Axis Tracking Using Topology Constrained Surface Evolution. IEEE Trans. Med. Imaging 26(3): 309-316 (2007)

Michiel Schaap, Ihor Smal, Coert Metz, Theo van Walsum, Wiro J. Niessen: Bayesian Tracking of Elongated Structures in 3D Images. IPMI 2007: 74-85

Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik H. W. Meijering: Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. IPMI 2007: 110-121

Oleh Dzyubachyk, Wiro J. Niessen, Erik H. W. Meijering: A Variational Model for Level-set Based Cell Tracking in Time-lapse Fluorescence Microscopy Images. ISBI 2007: 97-100

Renske de Boer, Fedde van der Lijn, Henri A. Vrooman, Meike W. Vernooij, M. Arfan Ikram, Monique M. B. Breteler, Wiro J. Niessen: Automatic Segmentation of Brain Tissue Andwhitematter Lesions in MRI. ISBI 2007: 652-655

Coert Metz, Michiel Schaap, Alina G. van der Giessen, Theo van Walsum, Wiro J. Niessen: Semi-Automatic Coronary Artery Centerline Extraction in Computed Tomography Angiography Data. ISBI 2007: 856-859

Wiro J. Niessen, Everine B. van de Kraats, Shirley A. M. Baert, Theo van Walsum: 3d X-Ray Image Guidance in Interventional Radiology. ISBI 2007: 1000-1003

Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering: Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. ISBI 2007: 1048-1051

Michiel Schaap, Rashindra Manniesing, Ihor Smal, Theo van Walsum, Aad van der Lugt, Wiro J. Niessen: Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA. MICCAI (2) 2007: 562-570

Everine B. van de Kraats, Theo van Walsum, Lance Kendrick, Niels J. Noordhoek, Wiro J. Niessen: Accuracy evaluation of direct navigation with an isocentric 3D rotational X-ray system. Medical Image Analysis 10(2): 113-124 (2006)

Rashindra Manniesing, B. K. Velthuis, M. S. van Leeuwen, I. C. van der Schaaf, P. J. van Laar, Wiro J. Niessen: Level set based cerebral vasculature segmentation and diameter quantification in CT angiography. Medical Image Analysis 10(2): 200-214 (2006)

Rashindra Manniesing, Max A. Viergever, Wiro J. Niessen: Vessel enhancing diffusion: A scale space representation of vessel structures. Medical Image Analysis 10(6): 815-825 (2006)

François Rousseau, Pierre Hellier, Marloes M. J. Letteboer, Wiro J. Niessen, Christian Barillot: Quantitative Evaluation of Three Calibration Methods for 3-D Freehand Ultrasound. IEEE Trans. Med. Imaging 25(11): 1492-1501 (2006)

Rashindra Manniesing, Wiro J. Niessen: Shape constrained vessel centerline extraction by integrating surface evolution and topology analysis. ISBI 2006: 165-168

Ihor Smal, Wiro J. Niessen, Erik H. W. Meijering: Bayesian tracking for fluorescence microscopic imaging. ISBI 2006: 550-553

Lejla Alic, Jifke F. Veenland, Marion van Vliet, C. F. van Dijke, A. M. M. Eggermont, Wiro J. Niessen: Quantification of heterogeneity in dynamic contrast enhanced MRI data for tumor treatment assessment. ISBI 2006: 944-947

Marloes Maria Johanna Letteboer, Peter W. A. Willems, Max A. Viergever, Wiro J. Niessen: Brain shift estimation in image-guided neurosurgery using 3-D ultrasound. IEEE Trans. Biomed. Engineering 52(2): 268-276 (2005)

Sílvia Delgado Olabarriaga, Jean-Michel Rouet, Maxim Fradkin, Marcel Breeuwer, Wiro J. Niessen: Segmentation of thrombus in abdominal aortic aneurysms from CTA with nonparametric statistical grey level appearance modeling. IEEE Trans. Med. Imaging 24(4): 477-485 (2005)

Theo van Walsum, Shirley A. M. Baert, Wiro J. Niessen: Guide wire reconstruction and visualization in 3DRA using monoplane fluoroscopic imaging. IEEE Trans. Med. Imaging 24(5): 612-623 (2005)

Everine B. van de Kraats, Graeme P. Penney, Dejan Tomazevic, Theo van Walsum, Wiro J. Niessen: Standardized evaluation methodology for 2-D-3-D registration. IEEE Trans. Med. Imaging 24(9): 1177-1189 (2005)

Rashindra Manniesing, Wiro J. Niessen: Multiscale Vessel Enhancing Diffusion in CT Angiography Noise Filtering. IPMI 2005: 138-149

Everine B. van de Kraats, Graeme P. Penney, Theo van Walsum, Wiro J. Niessen: Multispectral MR to X-Ray Registration of Vertebral Bodies by Generating CT-Like Data. MICCAI (2) 2005: 911-918

Cynthia Jongen, Josien P. W. Pluim, Paul H. J. Nederkoorn, Max A. Viergever, Wiro J. Niessen: Construction and evaluation of an average CT brain image for inter-subject registration. Comp. in Bio. and Med. 34(8): 647-662 (2004)

Marleen de Bruijne, Bram van Ginneken, Max A. Viergever, Wiro J. Niessen: Interactive segmentation of abdominal aortic aneurysms in CTA images. Medical Image Analysis 8(2): 127-138 (2004)

Michael Kaus, Jens von Berg, Jürgen Weese, Wiro J. Niessen, Vladimir Pekar: Automated segmentation of the left ventricle in cardiac MRI. Medical Image Analysis 8(3): 245-254 (2004)

Onno Wink, Wiro J. Niessen, Max A. Viergever: Multiscale vessel tracking. IEEE Trans. Med. Imaging 23(1): 130-133 (2004)

Graeme P. Penney, Julia A. Schnabel, Daniel Rueckert, Max A. Viergever, Wiro J. Niessen: Registration-based interpolation. IEEE Trans. Med. Imaging 23(7): 922-926 (2004)

Babak Movassaghi, Volker Rasche, Michael Grass, Max A. Viergever, Wiro J. Niessen: A quantitative analysis of 3-D coronary modeling from two or more projection images. IEEE Trans. Med. Imaging 23(12): 1517-1531 (2004)

Chris A. Cocosco, Thomas Netsch, Julien Sénégas, Daniel Bystrov, Wiro J. Niessen, Max A. Viergever: Automatic cardiac region-of-interest computation in cine 3D structural MRI. CARS 2004: 1126-1131

Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen: Segmentation of Abdominal Aortic Aneurysms with a Non-parametric Appearance Model. ECCV Workshops CVAMIA and MMBIA 2004: 257-268

Graeme P. Penney, Krista Joosten, Marloes M. J. Letteboer, Max A. Viergever, Wiro J. Niessen: Three-Dimensional Reconstruction of Tracked Freehand Ultrasound Using Non-Rigid Registration. ISBI 2004: 492-495

Theo van Walsum, Everine B. van de Kraats, Bart Carelsen, Sjirk N. Boon, Niels J. Noordhoek, Wiro J. Niessen: Accuracy of Navigation on 3DRX Data Acquired with a Mobile Propeller C-Arm. MICCAI (2) 2004: 455-461

Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen: Multi-scale Statistical Grey Value Modelling for Thrombus Segmentation from CTA. MICCAI (1) 2004: 467-474

Rashindra Manniesing, Wiro J. Niessen: Local Speed Functions in Level Set Based Vessel Segmentation. MICCAI (1) 2004: 475-482

Graeme P. Penney, Julia A. Schnabel, Daniel Rueckert, David J. Hawkes, Wiro J. Niessen: Registration-Based Interpolation Using a High-Resolution Image for Guidance. MICCAI (1) 2004: 558-565

Everine B. van de Kraats, Graeme P. Penney, Dejan Tomazevic, Theo van Walsum, Wiro J. Niessen: Standardized Evaluation of 2D-3D Registration. MICCAI (1) 2004: 574-581

Shirley A. M. Baert, Graeme P. Penney, Theo van Walsum, Wiro J. Niessen: Precalibration Versus 2D-3D Registration for 3D Guide Wire Display in Endovascular Interventions. MICCAI (2) 2004: 577-584

Marleen de Bruijne, Wiro J. Niessen, J. B. Antoine Maintz, Max A. Viergever: Localization and Segmentation of Aortic Endografts using Marker Detection. IEEE Trans. Med. Imaging 22(4): 473-482 (2003)

Cornelis M. van Bemmel, Onno Wink, Bert Verdonck, Max A. Viergever, Wiro J. Niessen: Blood Pool Contrast Enhanced MRA: Improved Arterial Visualization in the Steady State. IEEE Trans. Med. Imaging 22(5): 645-652 (2003)

Jon Sporring, Wiro J. Niessen, Joachim Weickert: Growth and Motion in Three-Dimensional Images. IEEE Trans. Med. Imaging 22(6): 697-698 (2003)

Shirley A. M. Baert, Max A. Viergever, Wiro J. Niessen: Guide Wire Tracking During Endovascular Interventions. IEEE Trans. Med. Imaging 22(8): 965-972 (2003)

Cornelis M. van Bemmel, Luuk J. Spreeuwers, Max A. Viergever, Wiro J. Niessen: Level-Set Based Artery-Vein Separation in Blood Pool Agent CE-MR Angiograms. IEEE Trans. Med. Imaging 22(10): 1224-1234 (2003)

Shirley A. M. Baert, Everine B. van de Kraats, Theo van Walsum, Max A. Viergever, Wiro J. Niessen: 3D Guide Wire Reconstruction from Biplane Image Sequence for Integrated Display fin 3D Vasculature. IEEE Trans. Med. Imaging 22(10): 1252-1258 (2003)

Marloes M. J. Letteboer, Max A. Viergever, Wiro J. Niessen: Rigid registration of 3D ultrasound data of brain tumours. CARS 2003: 433-439

Babak Movassaghi, Volker Rasche, R. Florent, Max A. Viergever, Wiro J. Niessen: 3D coronary reconstruction from calibrated motion-compensated 2D projections. CARS 2003: 1079-1084

Sílvia Delgado Olabarriaga, Wiro J. Niessen, Marcel Breeuwer: Evaluation of Hessian-based filters to enhance the axis of coronary arteries in CT images. CARS 2003: 1191-1196

Babak Movassaghi, Volker Rasche, Max A. Viergever, Wiro J. Niessen: Non-ECG gated 3D-rotational coronary angiography. CARS 2003: 1396

Alejandro F. Frangi, Daniel Rueckert, Julia A. Schnabel, Wiro J. Niessen: Automatic Construction of Biventricular Statistical Shape Models. FIMH 2003: 18-29

Marleen de Bruijne, Bram van Ginneken, Max A. Viergever, Wiro J. Niessen: Adapting Active Shape Models for 3D Segmentation of Tubular Structures in Medical Images. IPMI 2003: 136-147

Marloes M. J. Letteboer, Peter W. A. Willems, Max A. Viergever, Wiro J. Niessen: Non-rigid Registration of 3D Ultrasound Images of Brain Tumours Acquired during Neurosurgery. MICCAI (2) 2003: 408-415

Michael Kaus, Jens von Berg, Wiro J. Niessen, Vladimir Pekar: Automated Segmentation of the Left Ventricle in Cardiac MRI. MICCAI (1) 2003: 432-439

Marleen de Bruijne, Bram van Ginneken, Lambertus W. Bartels, Maarten J. van der Laan, Jan D. Blankensteijn, Wiro J. Niessen, Max A. Viergever: Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images. MICCAI (2) 2003: 538-545

Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen: Minimum Cost Path Algorithm for Coronary Artery Central Axis Tracking in CT Images. MICCAI (2) 2003: 687-694

Erik H. W. Meijering, Wiro J. Niessen, Joachim Weickert, Max A. Viergever: Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation. Medical Image Analysis 6(3): 215-233 (2002)

Alejandro F. Frangi, Daniel Rueckert, Julia A. Schnabel, Wiro J. Niessen: Automatic Construction of Multiple-object Three-dimensional Statistical Shape Models: Application to Cardiac Modelling. IEEE Trans. Med. Imaging 21(9): 1151-1166 (2002)

Wiro J. Niessen, Cornelis M. van Bemmel, Alejandro F. Frangi, M. J. A. Siers, Onno Wink: Model-based segmentation of cardiac and vascular images. ISBI 2002: 22-25

Cornelis M. van Bemmel, Luuk J. Spreeuwers, Max A. Viergever, Wiro J. Niessen: Level-Set Based Carotid Artery Segmentation for Stenosis Grading. MICCAI (2) 2002: 36-43

Shirley A. M. Baert, Wiro J. Niessen: 2D Guide Wire Tracking during Endovascular Interventions. MICCAI (2) 2002: 101-108

Tanja Alderliesten, Maurits K. Konings, Wiro J. Niessen: Simulation of Guide Wire Propagation for Minimally Invasive Vascular Interventions. MICCAI (2) 2002: 245-252

Shirley A. M. Baert, Everine B. van de Kraats, Wiro J. Niessen: 3D Guide Wire Reconstruction from Biplane Image Sequences for 3D Navigation in Endovascular Interventions. MICCAI (1) 2002: 404-410

Alejandro F. Frangi, Michael Egmont-Petersen, Wiro J. Niessen, Johan H. C. Reiber, Max A. Viergever: Bone tumor segmentation from MR perfusion images with neural networks using multi-scale pharmacokinetic features. Image Vision Comput. 19(9-10): 679-690 (2001)

Erik H. W. Meijering, Wiro J. Niessen, Max A. Viergever: Quantitative evaluation of convolution-based methods for medical image interpolation. Medical Image Analysis 5(2): 111-126 (2001)

Alejandro F. Frangi, Wiro J. Niessen, Max A. Viergever: Three-Dimensional Modeling for Functional Analysis of Cardiac Images: A Review. IEEE Trans. Med. Imaging 20(1): 2-5 (2001)

Wiro J. Niessen: Geometric Partial Differential Equations and Image Analysis. IEEE Trans. Med. Imaging 20(12): 1426-1427 (2001)

Alejandro F. Frangi, Daniel Rueckert, Julia A. Schnabel, Wiro J. Niessen: Automatic 3D ASM Construction via Atlas-Based Landmarking and Volumetric Elastic Registration. IPMI 2001: 78-91

Erik H. W. Meijering, Wiro J. Niessen, Joachim Weickert, Max A. Viergever: Evaluation of Diffusion Techniques for Improved Vessel Visualization and Quantification in Three-Dimensional Rotational Angiography. MICCAI 2001: 177-185

Cornelis M. van Bemmel, Wiro J. Niessen, Onno Wink, Bert Verdonck, Max A. Viergever: Blood Pool Agent CE-MRA: Improved Arterial Visualization of the Aortoiliac Vasculature in the Steady-State Using First-Pass Data. MICCAI 2001: 699-706

Onno Wink, Wiro J. Niessen, Bert Verdonck, Max A. Viergever: Vessel Axis Determination Using Wave Front Propagation Analysis. MICCAI 2001: 845-853

Wiro J. Niessen, Max A. Viergever (Eds.): Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, 4th International Conference, Utrecht, The Netherlands, October 14-17, 2001, Proceedings. Lecture Notes in Computer Science 2208, Springer 2001, isbn 3-540-42697-3

Onno Wink, Wiro J. Niessen, Max A. Viergever: Fast Delineation and Visualization of Vessels in 3D Angiographic Images. IEEE Trans. Med. Imaging 19(4): 337-346 (2000)

Michael Abramoff, Wiro J. Niessen, Max A. Viergever: Objective Quantifications of the Motion of Orbital Soft Tissues. IEEE Trans. Med. Imaging 19(10): 986-995 (2000)

Michael Egmont-Petersen, Alejandro F. Frangi, Wiro J. Niessen, P. C. W. Hogendoorn, Johan L. Bloem, Max A. Viergever, Johan H. C. Reiber: Segmentation of Bone Tumor in MR Perfusion Images Using Neural Networks and Multiscale Pharmacokinetic Features. ICPR 2000: 4080-4083

Onno Wink, Wiro J. Niessen, Max A. Viergever: Minimum Cost Path Determination Using a Simple Heuristic Function. ICPR 2000: 7010-7013

Shirley A. M. Baert, Wiro J. Niessen, Erik H. W. Meijering, Alejandro F. Frangi, Max A. Viergever: Guide Wire Tracking During Endovascular Interventions. MICCAI 2000: 727-734

Wiro J. Niessen: Vascular Image Processing. SIBGRAPI 2000: 3-6

Wiro J. Niessen, Koen L. Vincken, Joachim Weickert, Bart M. ter Haar Romeny, Max A. Viergever: Multiscale Segmentation of Three-Dimensional MR Brain Images. International Journal of Computer Vision 31(2-3): 185-202 (1999)

Luc Florack, Robert Maas, Wiro J. Niessen: Pseudo-Linear Scale-Space Theory. International Journal of Computer Vision 31(2-3): 247-259 (1999)

Mads Nielsen, Robert Maas, Wiro J. Niessen, Luc Florack, Bart M. ter Haar Romeny: Binocular Stereo from Grey-Scale Images. Journal of Mathematical Imaging and Vision 10(2): 103-122 (1999)

Alejandro F. Frangi, Wiro J. Niessen, Romhild M. Hoogeveen, Theo van Walsum, Max A. Viergever: Model-Based Quantitation of 3D Magnetic Resonance Angiographic Images. IEEE Trans. Med. Imaging 18(10): 946-956 (1999)

Erik H. W. Meijering, Wiro J. Niessen, Max A. Viergever: Retrospective Motion Correction in Digital Subtraction Angiography: A Review. IEEE Trans. Med. Imaging 18(18): 2-21 (1999)

Erik H. W. Meijering, Karel J. Zuiderveld, Wiro J. Niessen, Max A. Viergever: A Fast Image Registration Technique for Motion Artifact Reduction in DSA. ICIP (3) 1999: 435-439

Erik H. W. Meijering, Wiro J. Niessen, Max A. Viergever: Piecewise Polynomial Kernels for Image Interpolation: A Generalization of Cubic Convolution. ICIP (3) 1999: 647-651

Erik H. W. Meijering, Wiro J. Niessen, Max A. Viergever: The Sinc-Approximating Kernels of Classical Polynomial Interpolation. ICIP (3) 1999: 652-656

Wiro J. Niessen, Alexander Montauban van Swijndregt, Bernard Elsman, Onno Wink, Max A. Viergever, Willem Mali: Enhanced Artery Visualization in Blood Pool MRA: Results in the Peripheral Vasculature. IPMI 1999: 340-345

Erik H. W. Meijering, Wiro J. Niessen, Josien P. W. Pluim, Max A. Viergever: Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation. MICCAI 1999: 210-217

Alejandro F. Frangi, Wiro J. Niessen, Romhild M. Hoogeveen, Theo van Walsum, Max A. Viergever: Quantitation of Vessel Morphology from 3D MRA. MICCAI 1999: 358-367

Luc Florack, Wiro J. Niessen, Mads Nielsen: The Intrinsic Structure of Optic Flow Incorporating Measurement Duality. International Journal of Computer Vision 27(3): 263-286 (1998)

Wiro J. Niessen, Bart M. ter Haar Romeny, Max A. Viergever: Geodesic Deformable Models for Medical Image Analysis. IEEE Trans. Med. Imaging 17(4): 634-641 (1998)

Wiro J. Niessen, Koen L. Vincken, Joachim Weickert, Max A. Viergever: Three Dimensional MR Brain Segmentation. ICCV 1998: 53-58

Alejandro F. Frangi, Wiro J. Niessen, Koen L. Vincken, Max A. Viergever: Muliscale Vessel Enhancement Filtering. MICCAI 1998: 130-137

Onno Wink, Wiro J. Niessen, Max A. Viergever: Fast Quantification of Abdominal Aortic Aneurysms from CTA Volumes. MICCAI 1998: 138-145

Wiro J. Niessen, Carolien J. Bouma, Koen L. Vincken, Max A. Viergever: Error Metrics for Quantitative Evaluation of Medical Image Segmentation. Theoretical Foundations of Computer Vision 1998: 275-284

Wiro J. Niessen, James S. Duncan, Mads Nielsen, Luc Florack, Bart M. ter Haar Romeny, Max A. Viergever: Multiscale Approach to Image Sequence Analysis. Computer Vision and Image Understanding 65(2): 259-268 (1997)

Wiro J. Niessen, Koen L. Vincken, Joachim Weickert, Max A. Viergever: Nonlinear Multiscale Representations for Image Segmentation. Computer Vision and Image Understanding 66(2): 233-245 (1997)

Wiro J. Niessen, Bart M. ter Haar Romeny, Luc Florack, Max A. Viergever: A General Framework for Geometry-Driven Evolution Equations. International Journal of Computer Vision 21(3): 187-205 (1997)

Carolien J. Bouma, Wiro J. Niessen, Karel J. Zuiderveld, Elma J. Gussenhoven, Max A. Viergever: Automated lumen definition from 30 MHz intravascular ultrasound images. Medical Image Analysis 1(4): 363-377 (1997)

Joachim Weickert, Karel J. Zuiderveld, Bart M. ter Haar Romeny, Wiro J. Niessen: Parallel Implementations of AOS Schemes: A Fast Way of Nonlinear Diffusion Filtering. ICIP (3) 1997: 396-399

Wiro J. Niessen, A. M. López, W. J. van Enk, P. M. v. Roermund, Bart M. ter Haar Romeny, Max A. Viergever: In Vivo Analysis of Trabecular Bone Architecture. IPMI 1997: 435-440

Mads Nielsen, Wiro J. Niessen, Robert Maas, Luc Florack, Bart M. ter Haar Romeny: On the Duality of Scalar and Density Flows. Scale-Space 1997: 65-76

Freek J. Beekman, Ed T. P. Slijpen, Wiro J. Niessen: Supervised Diffusion Parameter Selection for Filtering SPECT Brain Images. Scale-Space 1997: 164-175

Koen L. Vincken, Wiro J. Niessen, Max A. Viergever: Blurring Strategies for Image Segmentation Using a Multiscale Linking Model. CVPR 1996: 21-26

Carolien J. Bouma, Wiro J. Niessen, Karel J. Zuiderveld, Elma J. Gussenhoven, Max A. Viergever: Evaluation of Segmentation Algorithms for Intravascular Ultrasound Images. VBC 1996: 203-212

Bart M. ter Haar Romeny, Wiro J. Niessen, Janita Wilting, Luc Florack: Differatial Structure of Images: Accuracy of Representation. ICIP (1) 1994: 21-25