Amos Bairoch

Lydie Lane, Ghislaine Argoud-Puy, Aurore Britan, Isabelle Cusin, Paula D. Duek, Olivier Evalet, Alain Gateau, Pascale Gaudet, Anne Gleizes, Alexandre Masselot, Catherine Zwahlen, Amos Bairoch: neXtProt: a knowledge platform for human proteins. Nucleic Acids Research 40(Database-Issue): 76-83 (2012)

Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B. Axelsen, Guillaume Keller, Amos Bairoch, Alan Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari: UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Research 40(Database-Issue): 761-769 (2012)

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki: Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research 39(Database-Issue): 7-10 (2011)

Chantal Hulo, Edouard De Castro, Patrick Masson, Lydie Bougueleret, Amos Bairoch, Ioannis Xenarios, Philippe Le Mercier: ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Research 39(Database-Issue): 576-582 (2011)

Guido Bologna, Anne-Lise Veuthey, Marco Pagni, Lydie Lane, Amos Bairoch: A Preliminary Study on the Prediction of Human Protein Functions. IWINAC (1) 2011: 334-343

Christian J. A. Sigrist, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Bulliard, Amos Bairoch, Nicolas Hulo: PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Research 38(Database-Issue): 161-166 (2010)

Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger: Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10 (2009)

Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: InterPro: the integrative protein signature database. Nucleic Acids Research 37(Database-Issue): 211-215 (2009)

Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard De Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch: HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Research 37(Database-Issue): 471-478 (2009)

Luiz Gonzaga Almeida, Noboru J. Sakabe, Alice R. de Oliveira, Maria Cristina C. Silva, Alex S. Mundstein, Tzeela Cohen, Yao-Tseng Chen, Ramon Chua, Sita Gurung, Sacha Gnjatic, Achim A. Jungbluth, Otavia L. Caballero, Amos Bairoch, Eva Kiesler, Sarah L. White, Andrew J. G. Simpson, Lloyd J. Old, Anamaria A. Camargo, Ana Tereza R. Vasconcelos: CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Research 37(Database-Issue): 816-819 (2009)

Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux: Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008. BMC Bioinformatics 9(S-8) (2008)

Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Béatrice A. Cuche, Edouard De Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist: The 20 years of PROSITE. Nucleic Acids Research 36(Database-Issue): 245-249 (2008)

Amos Bairoch: UniProtKB/Swiss-Prot: New and Future Developments. DILS 2008: 204-206

Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux (Eds.): Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings. Lecture Notes in Computer Science 5109, Springer 2008, isbn 978-3-540-69827-2

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)

Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek: The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research 34(Database-Issue): 187-191 (2006)

Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist: The PROSITE database. Nucleic Acids Research 34(Database-Issue): 227-230 (2006)

Edouard De Castro, Christian J. A. Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra S. Langendijk-Genevaux, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo: ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Research 34(Web-Server-Issue): 362-365 (2006)

Christian J. A. Sigrist, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Le Saux, Amos Bairoch, Nicolas Hulo: ProRule: a new database containing functional and structural information on PROSITE profiles. Bioinformatics 21(21): 4060-4066 (2005)

Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh: The Universal Protein Resource (UniProt). Nucleic Acids Research 33(Database-Issue): 154-159 (2005)

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)

Amos Bairoch, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger: Swiss-Prot: Juggling between evolution and stability. Briefings in Bioinformatics 5(1): 39-58 (2004)

Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh: UniProt: the Universal Protein knowledgebase. Nucleic Acids Research 32(Database-Issue): 115-119 (2004)

Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch: Recent improvements to the PROSITE database. Nucleic Acids Research 32(Database-Issue): 134-137 (2004)

Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler: IntEnz, the integrated relational enzyme database. Nucleic Acids Research 32(Database-Issue): 434-437 (2004)

Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler: IntAct: an open source molecular interaction database. Nucleic Acids Research 32(Database-Issue): 452-455 (2004)

Alexandre Gattiker, Karine Michoud, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Tania Lima, Paul Kersey, Marco Pagni, Christian J. A. Sigrist, Corinne Lachaize, Anne-Lise Veuthey, Elisabeth Gasteiger, Amos Bairoch: Automated annotation of microbial proteomes in SWISS-PROT. Computational Biology and Chemistry 27(1): 49-58 (2003)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)

Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider: The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Research 31(1): 365-370 (2003)

Elisabeth Gasteiger, Alexandre Gattiker, Christine Hoogland, Ivan Ivanyi, Ron D. Appel, Amos Bairoch: ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research 31(13): 3784-3788 (2003)

I. Q. H. Phan, Sandrine Pilbout, Wolfgang Fleischmann, Amos Bairoch: NEWT, a new taxonomy portal. Nucleic Acids Research 31(13): 3822-3823 (2003)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings in Bioinformatics 3(3): 225-235 (2002)

Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher: PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings in Bioinformatics 3(3): 265-274 (2002)

Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler: High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. Briefings in Bioinformatics 3(3): 275-284 (2002)

Flavio Monigatti, Elisabeth Gasteiger, Amos Bairoch, Eva Jung: The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics 18(5): 769-770 (2002)

Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch: The PROSITE database, its status in 2002. Nucleic Acids Research 30(1): 235-238 (2002)

Rolf Apweiler, Paul Kersey, Vivien Junker, Amos Bairoch: Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. Bioinformatics 17(6): 533-534 (2001)

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)

Amos Bairoch: Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!. Bioinformatics 16(1): 48-64 (2000)

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)

Amos Bairoch, Rolf Apweiler: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Research 28(1): 45-48 (2000)

Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Pierre-Alain Binz, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel: The 1999 SWISS-2DPAGE database update. Nucleic Acids Research 28(1): 286-288 (2000)

Amos Bairoch: The ENZYME database in 2000. Nucleic Acids Research 28(1): 304-305 (2000)

V. L. Junker, Rolf Apweiler, Amos Bairoch: Representation of functional information in the SWISS-PROT Data Bank. Bioinformatics 15(12): 1066-1067 (1999)

Amos Bairoch, Rolf Apweiler: The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Research 27(1): 49-54 (1999)

Kay Hofmann, Philipp Bucher, Laurent Falquet, Amos Bairoch: The PROSITE database, its status in 1999. Nucleic Acids Research 27(1): 215-219 (1999)

Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel: The SWISS-2DPAGE database: what has changed during the last year. Nucleic Acids Research 27(1): 289-291 (1999)

Amos Bairoch: The ENZYME data bank in 1999. Nucleic Acids Research 27(1): 310-311 (1999)

Amos Bairoch, Rolf Apweiler: The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. Nucleic Acids Research 26(1): 38-42 (1998)

Florence Horn, J. Weare, Margot W. Beukers, S. Hörsch, Amos Bairoch, W. Chen, Øyvind Edvardsen, Fabien Campagne, Gert Vriend: GPCRDB: an information system for G protein-coupled receptors. Nucleic Acids Research 26(1): 275-279 (1998)

Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel: Current status of the SWISS-2DPAGE database. Nucleic Acids Research 26(1): 332-333 (1998)

Amos Bairoch, Rolf Apweiler: The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Research 25(1): 31-36 (1997)

Amos Bairoch, Philipp Bucher, Kay Hofmann: The PROSITE database, its status in 1997. Nucleic Acids Research 25(1): 217-221 (1997)

Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch: Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. ISMB 1997: 33-43

Amos Bairoch, Rolf Apweiler: The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Research 24(1): 21-25 (1996)

Reinhard Dölz, Marie-Odile Mossé, Piotr P. Slonimski, Amos Bairoch, Patrick Linder: LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces. Nucleic Acids Research 24(1): 50-52 (1996)

Ron D. Appel, Jean-Charles Sanchez, Amos Bairoch, Olivier Golaz, Florence Ravier, Christian Pasquali, Graham J. Hughes, Denis F. Hochstrasser: The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995. Nucleic Acids Research 24(1): 180-181 (1996)

Amos Bairoch, Philipp Bucher, Kay Hofmann: The PROSITE database, its status in 1995. Nucleic Acids Research 24(1): 189-196 (1996)

Amos Bairoch: The ENZYME data bank in 1995. Nucleic Acids Research 24(1): 221-222 (1996)

Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch: New Developments in the Linking of Biological Databases and Computer-Generation of Annotation. German Conference on Bioinformatics 1996: 29-34

Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch: New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL. German Conference on Bioinformatics - Selected Papers 1996: 44-51

Philipp Bucher, Amos Bairoch: A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. ISMB 1994: 53-61

Amos Bairoch, Brigitte Boeckmann: The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Research 21(13): 3093-3096 (1993)

Amos Bairoch: The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Research 21(13): 3097-3103 (1993)

Amos Bairoch: The ENZYME data bank. Nucleic Acids Research 21(13): 3155-3156 (1993)

Amos Bairoch: SEQANALREF: a sequence analysis bibliographic reference databank. Computer Applications in the Biosciences 7(2): 268 (1991)