Volume 1, Number 1, 2008
Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang: Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. 1-13
Liangjiang Wang, Stephanie Jimenez Irausquin, Jack Y. Yang: Prediction of lipid-interacting amino acid residues from sequence features. 14-25
Mohieddine Missaoui, David R. C. Hill, Pierre Peyret: A comparison of algorithms for a complete backtranslation of oligopeptides. 26-38
Minseo Park, Deane L. Falcone, Karen M. Daniels: Detection and prediction of alternative splicing in Arabidopsis thaliana. 39-58
Xiaoli Li, Jun-Xiang Lee, Bharadwaj Veeravalli, See-Kiong Ng: Inferring Transcription Factor interactions using a novel HV-SVM classifier. 59-73
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell: Parsimony accelerated Maximum Likelihood searches. 74-87
Volume 1, Number 2, 2008

Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski: CLUSS2: an alignment-independent algorithm for clustering protein families with multiple biological functions. 122-140
Haiying Wang, Huiru Zheng, Jinglu Hu: Poisson approach to clustering analysis of regulatory sequences. 141-157
Vinhthuy Phan, Kriangsiri Malasri: BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data. 174-184
Huitao Sheng, Kishan Mehrotra, Chilukuri K. Mohan, Ramesh Raina: A motif extraction algorithm based on hashing and modulo-4 arithmetic. 185-199
Volume 1, Number 3, 2008
Jonathan L. Jesneck, Jack Y. Yang: Promoting synergistic research and education in computational biology and drug design. 219-223
Ayca C. Pehlivanli, Turgay Ibrikci, Okan K. Ersoy: Consensual classification of drug and nondrug compounds. 224-234
Patrick Shaughnessy, Gary Livingston, Michael V. Graves: Towards predicting Protein-Protein Interactions in novel organisms. 235-253
Chao Zhang, Trupti Joshi, Guan Ning Lin, Dong Xu: An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data. 254-274
Amira Djebbari, Ziying Liu, Sieu Phan, Fazel Famili: An ensemble machine learning approach to predict survival in breast cancer. 275-294
Christopher M. Frenz, Philippe P. Lefebvre: Molecular modelling insights into DFNA15 mediated enhancement of POU4F3 stability. 295-301
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas Jennewein, Volker Brendel: Implementing bioinformatic workflows within the BioExtract Server. 302-312
Volume 1, Number 4, 2008
Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang: 2009 and beyond: the decade of personalised medicine. 329-333
Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang: Feature selection for the imbalanced QSAR problems by using EasyEnsemble. 334-346
Ankit Agrawal, Volker Brendel, Xiaoqiu Huang: Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. 347-367
Nathan E. Wineinger, Richard E. Kennedy, Stephen W. Erickson, Mary K. Wojczynski, Carl E. Bruder, Hemant K. Tiwari: Statistical issues in the analysis of DNA Copy Number Variations. 368-395
Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe: A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. 396-405
Michael Lawrence: Software for the interactive visualisation of experimental data in the genomic context. 406-421
Bo-ra Hyun, Hwiesung Jung, Woo-Hyuk Jang, Suk Hoon Jung, Dong-Soo Han: Weighted feature value based Drug Target Protein prediction. 422-433
Ayca C. Pehlivanli, Okan K. Ersoy, Turgay Ibrikci: Drug/nondrug classification with consensual Self-Organising Map and Self-Organising Global Ranking algorithms. 434-445



